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You're reading from  R Bioinformatics Cookbook - Second Edition

Product typeBook
Published inOct 2023
PublisherPackt
ISBN-139781837634279
Edition2nd Edition
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Dan MacLean
Dan MacLean
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Dan MacLean

Professor Dan MacLean has a PhD in molecular biology from the University of Cambridge and gained postdoctoral experience in genomics and bioinformatics at Stanford University in California. Dan is now an honorary professor at the School of Computing Sciences at the University of East Anglia. He has worked in bioinformatics and plant pathogenomics, specializing in R and Bioconductor, and has developed analytical workflows in bioinformatics, genomics, genetics, image analysis, and proteomics at the Sainsbury Laboratory since 2006. Dan has developed and published software packages in R, Ruby, and Python, with over 100,000 downloads combined.
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Modeling data with a linear model

Linear models are a type of statistical model used to analyze the relationship between a dependent variable and one or more independent variables. In essence, they seek to fit a line that best describes the relationship between these variables, allowing us to make predictions about the dependent variable based on the values of the independent variables. The equation for a simple linear model can be written as follows:

y = β 0 + β 1 x + ε

where y is the dependent variable, x is the independent variable, β 0 and β 1 are coefficients that represent the intercept and slope of the line, respectively, and ε is the error term.

The output of a linear model typically includes the coefficients of the model, which describe the strength and direction of the relationship between the variables, as well as measures of the model’s goodness of fit, such as the R-squared value.

Linear models...

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R Bioinformatics Cookbook - Second Edition
Published in: Oct 2023Publisher: PacktISBN-13: 9781837634279

Author (1)

author image
Dan MacLean

Professor Dan MacLean has a PhD in molecular biology from the University of Cambridge and gained postdoctoral experience in genomics and bioinformatics at Stanford University in California. Dan is now an honorary professor at the School of Computing Sciences at the University of East Anglia. He has worked in bioinformatics and plant pathogenomics, specializing in R and Bioconductor, and has developed analytical workflows in bioinformatics, genomics, genetics, image analysis, and proteomics at the Sainsbury Laboratory since 2006. Dan has developed and published software packages in R, Ruby, and Python, with over 100,000 downloads combined.
Read more about Dan MacLean