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You're reading from  R Bioinformatics Cookbook - Second Edition

Product typeBook
Published inOct 2023
PublisherPackt
ISBN-139781837634279
Edition2nd Edition
Concepts
Bioinformatics
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Author (1)
Dan MacLean
Dan MacLean
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Dan MacLean

Professor Dan MacLean has a PhD in molecular biology from the University of Cambridge and gained postdoctoral experience in genomics and bioinformatics at Stanford University in California. Dan is now an honorary professor at the School of Computing Sciences at the University of East Anglia. He has worked in bioinformatics and plant pathogenomics, specializing in R and Bioconductor, and has developed analytical workflows in bioinformatics, genomics, genetics, image analysis, and proteomics at the Sainsbury Laboratory since 2006. Dan has developed and published software packages in R, Ruby, and Python, with over 100,000 downloads combined.
Read more about Dan MacLean

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Generating code with ChatGPT

ChatGPT is useful for generating R code because it has been trained on a vast amount of programming-related text, including R code examples and best practices. With this knowledge, ChatGPT can understand user queries and provide accurate and contextually relevant R code suggestions. It can generate code snippets for tasks such as data manipulation, visualization, statistical analysis, and package usage. ChatGPT’s ability to leverage its training to generate syntactically correct and efficient R code helps users save time, improve their coding skills, and explore different approaches to problem-solving. It serves as a valuable resource for both novice and experienced R programmers seeking code generation assistance.

In this recipe, we’ll ask ChatGPT to develop a plot for us. Specifically, we’ll be looking for a pairs-style scatter plot of all samples against each other. As we’ll see, it doesn’t get it right but it does...

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R Bioinformatics Cookbook - Second Edition
Published in: Oct 2023Publisher: PacktISBN-13: 9781837634279
© 2023 Packt Publishing Limited All Rights Reserved

Author (1)

author image
Dan MacLean

Professor Dan MacLean has a PhD in molecular biology from the University of Cambridge and gained postdoctoral experience in genomics and bioinformatics at Stanford University in California. Dan is now an honorary professor at the School of Computing Sciences at the University of East Anglia. He has worked in bioinformatics and plant pathogenomics, specializing in R and Bioconductor, and has developed analytical workflows in bioinformatics, genomics, genetics, image analysis, and proteomics at the Sainsbury Laboratory since 2006. Dan has developed and published software packages in R, Ruby, and Python, with over 100,000 downloads combined.
Read more about Dan MacLean

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