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You're reading from  R Bioinformatics Cookbook - Second Edition

Product typeBook
Published inOct 2023
PublisherPackt
ISBN-139781837634279
Edition2nd Edition
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Dan MacLean
Dan MacLean
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Dan MacLean

Professor Dan MacLean has a PhD in molecular biology from the University of Cambridge and gained postdoctoral experience in genomics and bioinformatics at Stanford University in California. Dan is now an honorary professor at the School of Computing Sciences at the University of East Anglia. He has worked in bioinformatics and plant pathogenomics, specializing in R and Bioconductor, and has developed analytical workflows in bioinformatics, genomics, genetics, image analysis, and proteomics at the Sainsbury Laboratory since 2006. Dan has developed and published software packages in R, Ruby, and Python, with over 100,000 downloads combined.
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Classifying using random forest and interpreting it with iml

Random forest is a versatile ML algorithm that can be used for both regression and classification tasks. It is an ensemble learning method that combines multiple decision trees to make predictions. Decision trees split the data based on the values of features to create subsets with similar target variable values. Random forest combines multiple decision trees to create a more robust and accurate model. The algorithm randomly selects a subset of the training data (bootstrapping) and a subset of features at each tree’s node to create a diverse set of decision trees. The random subsets of the training data are used to train individual decision trees in the forest. The bootstrapping technique allows each tree to see a slightly different variation of the data, reducing the risk of overfitting.

Random forest assesses feature (variable) importance by evaluating how much each feature contributes to reducing error in the...

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R Bioinformatics Cookbook - Second Edition
Published in: Oct 2023Publisher: PacktISBN-13: 9781837634279

Author (1)

author image
Dan MacLean

Professor Dan MacLean has a PhD in molecular biology from the University of Cambridge and gained postdoctoral experience in genomics and bioinformatics at Stanford University in California. Dan is now an honorary professor at the School of Computing Sciences at the University of East Anglia. He has worked in bioinformatics and plant pathogenomics, specializing in R and Bioconductor, and has developed analytical workflows in bioinformatics, genomics, genetics, image analysis, and proteomics at the Sainsbury Laboratory since 2006. Dan has developed and published software packages in R, Ruby, and Python, with over 100,000 downloads combined.
Read more about Dan MacLean