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You're reading from  R Bioinformatics Cookbook - Second Edition

Product typeBook
Published inOct 2023
PublisherPackt
ISBN-139781837634279
Edition2nd Edition
Concepts
Bioinformatics
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Author (1)
Dan MacLean
Dan MacLean
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Dan MacLean

Professor Dan MacLean has a PhD in molecular biology from the University of Cambridge and gained postdoctoral experience in genomics and bioinformatics at Stanford University in California. Dan is now an honorary professor at the School of Computing Sciences at the University of East Anglia. He has worked in bioinformatics and plant pathogenomics, specializing in R and Bioconductor, and has developed analytical workflows in bioinformatics, genomics, genetics, image analysis, and proteomics at the Sainsbury Laboratory since 2006. Dan has developed and published software packages in R, Ruby, and Python, with over 100,000 downloads combined.
Read more about Dan MacLean

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Writing unit tests for R functions with ChatGPT

ChatGPT is beneficial for generating R unit tests because of its knowledge of programming patterns and best practices. It can understand code snippets, including functions and their expected behaviors, and generate relevant unit tests. By leveraging its training on diverse programming contexts, ChatGPT can assist in creating comprehensive test cases that cover different scenarios and edge cases. It helps ensure code correctness, identify potential bugs, and improve code reliability. ChatGPT’s ability to generate unit tests saves developers time and effort, promotes software quality, and contributes to building robust and well-tested R code. In this recipe, we’ll learn how to get ChatGPT to do the tedious work of generating test cases for code that we are working on.

Getting ready

We just need a ChatGPT account: https://chat.openai.com/.

How to do it…

To write unit tests for an R function with ChatGPT,...

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R Bioinformatics Cookbook - Second Edition
Published in: Oct 2023Publisher: PacktISBN-13: 9781837634279
© 2023 Packt Publishing Limited All Rights Reserved

Author (1)

author image
Dan MacLean

Professor Dan MacLean has a PhD in molecular biology from the University of Cambridge and gained postdoctoral experience in genomics and bioinformatics at Stanford University in California. Dan is now an honorary professor at the School of Computing Sciences at the University of East Anglia. He has worked in bioinformatics and plant pathogenomics, specializing in R and Bioconductor, and has developed analytical workflows in bioinformatics, genomics, genetics, image analysis, and proteomics at the Sainsbury Laboratory since 2006. Dan has developed and published software packages in R, Ruby, and Python, with over 100,000 downloads combined.
Read more about Dan MacLean

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