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You're reading from  R Bioinformatics Cookbook - Second Edition

Product typeBook
Published inOct 2023
PublisherPackt
ISBN-139781837634279
Edition2nd Edition
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Author (1)
Dan MacLean
Dan MacLean
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Dan MacLean

Professor Dan MacLean has a PhD in molecular biology from the University of Cambridge and gained postdoctoral experience in genomics and bioinformatics at Stanford University in California. Dan is now an honorary professor at the School of Computing Sciences at the University of East Anglia. He has worked in bioinformatics and plant pathogenomics, specializing in R and Bioconductor, and has developed analytical workflows in bioinformatics, genomics, genetics, image analysis, and proteomics at the Sainsbury Laboratory since 2006. Dan has developed and published software packages in R, Ruby, and Python, with over 100,000 downloads combined.
Read more about Dan MacLean

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Plotting variability and confidence intervals better with ggdist

Confidence intervals are used to make inferences about a population based on a sample of data. They capture the variability of the data by providing a range of possible values for some parameter, rather than a single point estimate. The interval is a measure of how sure we are that the interval contains the true population parameter. It is common to show distributions and annotate them with range markers or confidence intervals. With this recipe, we will look at how to use ggplot’s ggdist extension to make informative and great-looking plots of distributions.

Getting ready

For this recipe, we need the ggdist, ggplot2, and palmerpenguins packages.

How to do it…

We can create plots with confidence intervals as follows:

  1. Create a raincloud plot:
    library(ggplot2)library(ggdist)library(palmerpenguins)ggplot(penguins) +  aes(x = flipper_length_mm, y = island) +  geom_dots...
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R Bioinformatics Cookbook - Second Edition
Published in: Oct 2023Publisher: PacktISBN-13: 9781837634279

Author (1)

author image
Dan MacLean

Professor Dan MacLean has a PhD in molecular biology from the University of Cambridge and gained postdoctoral experience in genomics and bioinformatics at Stanford University in California. Dan is now an honorary professor at the School of Computing Sciences at the University of East Anglia. He has worked in bioinformatics and plant pathogenomics, specializing in R and Bioconductor, and has developed analytical workflows in bioinformatics, genomics, genetics, image analysis, and proteomics at the Sainsbury Laboratory since 2006. Dan has developed and published software packages in R, Ruby, and Python, with over 100,000 downloads combined.
Read more about Dan MacLean