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You're reading from  R for Data Science Cookbook (n)

Product typeBook
Published inJul 2016
Reading LevelIntermediate
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ISBN-139781784390815
Edition1st Edition
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Author (1)
Yu-Wei, Chiu (David Chiu)
Yu-Wei, Chiu (David Chiu)
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Yu-Wei, Chiu (David Chiu)

Yu-Wei, Chiu (David Chiu) is the founder of LargitData (www.LargitData.com), a startup company that mainly focuses on providing big data and machine learning products. He has previously worked for Trend Micro as a software engineer, where he was responsible for building big data platforms for business intelligence and customer relationship management systems. In addition to being a start-up entrepreneur and data scientist, he specializes in using Spark and Hadoop to process big data and apply data mining techniques for data analysis. Yu-Wei is also a professional lecturer and has delivered lectures on big data and machine learning in R and Python, and given tech talks at a variety of conferences. In 2015, Yu-Wei wrote Machine Learning with R Cookbook, Packt Publishing. In 2013, Yu-Wei reviewed Bioinformatics with R Cookbook, Packt Publishing. For more information, please visit his personal website at www.ywchiu.com. **********************************Acknowledgement************************************** I have immense gratitude for my family and friends for supporting and encouraging me to complete this book. I would like to sincerely thank my mother, Ming-Yang Huang (Miranda Huang); my mentor, Man-Kwan Shan; the proofreader of this book, Brendan Fisher; Members of LargitData; Data Science Program (DSP); and other friends who have offered their support.
Read more about Yu-Wei, Chiu (David Chiu)

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Measuring model performance with a confusion matrix


To measure the performance of a classification model, we can first generate a classification table based on our predicted label and actual label. We then use a confusion matrix to obtain performance measures such as precision, recall, specificity, and accuracy. In this recipe, we will demonstrate how to retrieve a confusion matrix using the caret package.

Getting ready

You need to have the previous recipes completed by generating a classification model, and assign the model to the variable fit.

How to do it…

Perform the following steps to generate classification measurement:

  1. Predict labels using the fitted model, fit:

    > pred = predict(fit, testset[,! names(testset) %in% c("buy")], type="class")
    
  2. Generate a classification table:

    > table(pred, testset[,c("buy")])
         
    pred  no yes
      no  11   1
      yes  0   8
    
  3. Lastly, generate a confusion matrix using prediction results and actual labels from the testing dataset:

    > confusionMatrix(pred, testset...
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R for Data Science Cookbook (n)
Published in: Jul 2016Publisher: ISBN-13: 9781784390815

Author (1)

author image
Yu-Wei, Chiu (David Chiu)

Yu-Wei, Chiu (David Chiu) is the founder of LargitData (www.LargitData.com), a startup company that mainly focuses on providing big data and machine learning products. He has previously worked for Trend Micro as a software engineer, where he was responsible for building big data platforms for business intelligence and customer relationship management systems. In addition to being a start-up entrepreneur and data scientist, he specializes in using Spark and Hadoop to process big data and apply data mining techniques for data analysis. Yu-Wei is also a professional lecturer and has delivered lectures on big data and machine learning in R and Python, and given tech talks at a variety of conferences. In 2015, Yu-Wei wrote Machine Learning with R Cookbook, Packt Publishing. In 2013, Yu-Wei reviewed Bioinformatics with R Cookbook, Packt Publishing. For more information, please visit his personal website at www.ywchiu.com. **********************************Acknowledgement************************************** I have immense gratitude for my family and friends for supporting and encouraging me to complete this book. I would like to sincerely thank my mother, Ming-Yang Huang (Miranda Huang); my mentor, Man-Kwan Shan; the proofreader of this book, Brendan Fisher; Members of LargitData; Data Science Program (DSP); and other friends who have offered their support.
Read more about Yu-Wei, Chiu (David Chiu)