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R for Data Science Cookbook (n)

You're reading from  R for Data Science Cookbook (n)

Product type Book
Published in Jul 2016
Publisher
ISBN-13 9781784390815
Pages 452 pages
Edition 1st Edition
Languages
Author (1):
Yu-Wei, Chiu (David Chiu) Yu-Wei, Chiu (David Chiu)
Profile icon Yu-Wei, Chiu (David Chiu)

Table of Contents (19) Chapters

R for Data Science Cookbook
Credits
About the Author
About the Reviewer
www.PacktPub.com
Preface
Functions in R Data Extracting, Transforming, and Loading Data Preprocessing and Preparation Data Manipulation Visualizing Data with ggplot2 Making Interactive Reports Simulation from Probability Distributions Statistical Inference in R Rule and Pattern Mining with R Time Series Mining with R Supervised Machine Learning Unsupervised Machine Learning Index

Comparing clustering methods


After fitting data into clusters using different clustering methods, you may wish to measure the accuracy of the clustering. In most cases, you can use either intra-cluster or inter-cluster metrics as measurements. We now introduce how to compare different clustering methods using custer.stat from the fpc package.

Getting ready

In order to perform the clustering method comparison, you need to have completed the previous recipe by generating the hotel location dataset.

How to do it…

Perform the following steps to compare clustering methods:

  1. First, install and load the fpc package:

    > install.packages("fpc")
    > library(fpc)
    
  2. You then need to use hierarchical clustering with the single method to cluster customer data and generate the object hc_single:

    > hotel.dist <- dist(hotel[,c('lat', 'lon')] , method="euclidean")
    > single_c <- hclust(hotel.dist, method="single")
    
    > hc_single <- cutree(single_c, k = 3)
    
  3. Use hierarchical clustering with the complete...

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