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You're reading from  Matplotlib for Python Developers. - Second Edition

Product typeBook
Published inApr 2018
Reading LevelIntermediate
PublisherPackt
ISBN-139781788625173
Edition2nd Edition
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Authors (3):
Aldrin Yim
Aldrin Yim
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Aldrin Yim

Aldrin Yim is a PhD candidate and Markey Scholar in the Computation and System Biology program at Washington University, School of Medicine. His research focuses on applying big data analytics and machine learning approaches in studying neurological diseases and cancer. He is also the founding CEO of Codex Genetics Limited, which provides precision medicine solutions to patients and hospitals in Asia.
Read more about Aldrin Yim

Claire Chung
Claire Chung
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Claire Chung

Claire Chung is pursuing her PhD degree as a Bioinformatician at the Chinese University of Hong Kong. She enjoys using Python daily for work and lifehack. While passionate in science, her challenge-loving character motivates her to go beyond data analytics. She has participated in web development projects, as well as developed skills in graphic design and multilingual translation. She led the Campus Network Support Team in college, and shared her experience in data visualization in PyCon HK 2017.
Read more about Claire Chung

Allen Yu
Allen Yu
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Allen Yu

Allen Yu, PhD, is a Chevening Scholar, 2017-18, and an MSC student in computer science at the University of Oxford. He holds a PhD degree in Biochemistry from the Chinese University of Hong Kong, and he has used Python and Matplotlib extensively during his 10 years of bioinformatics experience.
Read more about Allen Yu

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More on Pandas-Matplotlib integration


Pandas provides the DataFrame data structure commonly used in handling multivariate data. When we usually use the Pandas package for data I/O, storage, and preprocessing, it also provides a number of native integrations with Matplotlib for quick visualization. 

To create these plots, we can call df.plot(kind=plot_type)df.plot.scatter(), and so on. Here is a list of available plot types:

  • line: Line plot (default)
  • bar: Vertical bar plot
  • barh: Horizontal bar plot
  • hist: Histogram
  • box: Boxplot
  • kde: Kernel Density Estimation (KDE) plot
  • density: The same as kde
  • area: Area plot
  • pie: Pie plot

We have created some of the simpler graphs in the previous chapters. Here, we will take the density plot as an example for discussion.

Showing distribution with the KDE plot

Similar to a histogram, the KDE plot is a method to visualize the shape of data distribution. It uses kernel smoothing to create smooth curves and is often combined with a histogram. It is useful in exploratory...

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Matplotlib for Python Developers. - Second Edition
Published in: Apr 2018Publisher: PacktISBN-13: 9781788625173

Authors (3)

author image
Aldrin Yim

Aldrin Yim is a PhD candidate and Markey Scholar in the Computation and System Biology program at Washington University, School of Medicine. His research focuses on applying big data analytics and machine learning approaches in studying neurological diseases and cancer. He is also the founding CEO of Codex Genetics Limited, which provides precision medicine solutions to patients and hospitals in Asia.
Read more about Aldrin Yim

author image
Claire Chung

Claire Chung is pursuing her PhD degree as a Bioinformatician at the Chinese University of Hong Kong. She enjoys using Python daily for work and lifehack. While passionate in science, her challenge-loving character motivates her to go beyond data analytics. She has participated in web development projects, as well as developed skills in graphic design and multilingual translation. She led the Campus Network Support Team in college, and shared her experience in data visualization in PyCon HK 2017.
Read more about Claire Chung

author image
Allen Yu

Allen Yu, PhD, is a Chevening Scholar, 2017-18, and an MSC student in computer science at the University of Oxford. He holds a PhD degree in Biochemistry from the Chinese University of Hong Kong, and he has used Python and Matplotlib extensively during his 10 years of bioinformatics experience.
Read more about Allen Yu