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You're reading from  Bayesian Analysis with Python - Third Edition

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Published inJan 2024
Reading LevelExpert
PublisherPackt
ISBN-139781805127161
Edition3rd Edition
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Osvaldo Martin
Osvaldo Martin
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Osvaldo Martin

Osvaldo Martin is a researcher at CONICET, in Argentina. He has experience using Markov Chain Monte Carlo methods to simulate molecules and perform Bayesian inference. He loves to use Python to solve data analysis problems. He is especially motivated by the development and implementation of software tools for Bayesian statistics and probabilistic modeling. He is an open-source developer, and he contributes to Python libraries like PyMC, ArviZ and Bambi among others. He is interested in all aspects of the Bayesian workflow, including numerical methods for inference, diagnosis of sampling, evaluation and criticism of models, comparison of models and presentation of results.
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10.3 Quadratic method

The quadratic approximation, also known as the Laplace method or the normal approximation, consists of approximating the posterior with a Gaussian distribution. To do this, we first find the model of the posterior distribution; numerically, we can do this with an optimization method. Then we compute the Hessian matrix, from which we can then estimate the standard deviation. If you are wondering, the Hessian matrix is a square matrix of second-order partial derivatives. For what we care we can use it to obtain the standard deviation of in general a covariance matrix.

Bambi can solve Bayesian models using the quadratic method for us. In the following code block, we first define a model for the coin-flipping problem, the same one we already defined for the grid method, and then we fit it using the quadratic method, called laplace in Bambi:

Code 10.2

data = pd.DataFrame(data, columns=["w"]) 
priors = {"Intercept": bmb.Prior("Uniform...
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Bayesian Analysis with Python - Third Edition
Published in: Jan 2024Publisher: PacktISBN-13: 9781805127161

Author (1)

author image
Osvaldo Martin

Osvaldo Martin is a researcher at CONICET, in Argentina. He has experience using Markov Chain Monte Carlo methods to simulate molecules and perform Bayesian inference. He loves to use Python to solve data analysis problems. He is especially motivated by the development and implementation of software tools for Bayesian statistics and probabilistic modeling. He is an open-source developer, and he contributes to Python libraries like PyMC, ArviZ and Bambi among others. He is interested in all aspects of the Bayesian workflow, including numerical methods for inference, diagnosis of sampling, evaluation and criticism of models, comparison of models and presentation of results.
Read more about Osvaldo Martin