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You're reading from  Bayesian Analysis with Python. - Second Edition

Product typeBook
Published inDec 2018
Reading LevelIntermediate
PublisherPackt
ISBN-139781789341652
Edition2nd Edition
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Osvaldo Martin
Osvaldo Martin
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Osvaldo Martin

Osvaldo Martin is a researcher at CONICET, in Argentina. He has experience using Markov Chain Monte Carlo methods to simulate molecules and perform Bayesian inference. He loves to use Python to solve data analysis problems. He is especially motivated by the development and implementation of software tools for Bayesian statistics and probabilistic modeling. He is an open-source developer, and he contributes to Python libraries like PyMC, ArviZ and Bambi among others. He is interested in all aspects of the Bayesian workflow, including numerical methods for inference, diagnosis of sampling, evaluation and criticism of models, comparison of models and presentation of results.
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Gaussian process regression

Let's assume we can model a value as a function of plus some noise:

Here

This is similar to the assumption that we made in Chapter 3, Modeling with Linear Regression, for linear regression models. The main difference is that now we will put a prior distribution over . Gaussian processes can work as such a prior, thus we can write:

Here, represents a Gaussian process distribution, with being the mean function and the kernel, or covariance, function. Here, we have used the word function to indicate that, mathematically, the mean and covariance are infinite objects, even when, in practice, we always work with finite objects.

If the prior distribution is a GP and the likelihood is a normal distribution, then the posterior is also a GP and we can compute it analytically:


Here:

is the observed data point and represents the test points...

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Bayesian Analysis with Python. - Second Edition
Published in: Dec 2018Publisher: PacktISBN-13: 9781789341652

Author (1)

author image
Osvaldo Martin

Osvaldo Martin is a researcher at CONICET, in Argentina. He has experience using Markov Chain Monte Carlo methods to simulate molecules and perform Bayesian inference. He loves to use Python to solve data analysis problems. He is especially motivated by the development and implementation of software tools for Bayesian statistics and probabilistic modeling. He is an open-source developer, and he contributes to Python libraries like PyMC, ArviZ and Bambi among others. He is interested in all aspects of the Bayesian workflow, including numerical methods for inference, diagnosis of sampling, evaluation and criticism of models, comparison of models and presentation of results.
Read more about Osvaldo Martin