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You're reading from  Bayesian Analysis with Python. - Second Edition

Product typeBook
Published inDec 2018
Reading LevelIntermediate
PublisherPackt
ISBN-139781789341652
Edition2nd Edition
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Osvaldo Martin
Osvaldo Martin
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Osvaldo Martin

Osvaldo Martin is a researcher at CONICET, in Argentina. He has experience using Markov Chain Monte Carlo methods to simulate molecules and perform Bayesian inference. He loves to use Python to solve data analysis problems. He is especially motivated by the development and implementation of software tools for Bayesian statistics and probabilistic modeling. He is an open-source developer, and he contributes to Python libraries like PyMC, ArviZ and Bambi among others. He is interested in all aspects of the Bayesian workflow, including numerical methods for inference, diagnosis of sampling, evaluation and criticism of models, comparison of models and presentation of results.
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Cox processes

Let's now return to the example of modeling count data. We will see two examples; one with a time varying rate and one with a 2D-spatially varying rate. In order to do this, we will use a Poisson likelihood and the rate will be modeled using a Gaussian process. Because the rate of the Poisson distribution is limited to positive values, we will use an exponential as the inverse link function, as we did for the zero-inflated Poisson regression from Chapter 4, Generalizing Linear Models.

In the literature, the variable rate also appears with the name intensity; thus, this type of problem is known as intensity estimation. Also, this type of model is often referred to as a Cox model. A Cox model is a type of Poisson process, where the rate is itself a stochastic process. Just as a Gaussian process is a collection of random variables, where every finite collection...

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Bayesian Analysis with Python. - Second Edition
Published in: Dec 2018Publisher: PacktISBN-13: 9781789341652

Author (1)

author image
Osvaldo Martin

Osvaldo Martin is a researcher at CONICET, in Argentina. He has experience using Markov Chain Monte Carlo methods to simulate molecules and perform Bayesian inference. He loves to use Python to solve data analysis problems. He is especially motivated by the development and implementation of software tools for Bayesian statistics and probabilistic modeling. He is an open-source developer, and he contributes to Python libraries like PyMC, ArviZ and Bambi among others. He is interested in all aspects of the Bayesian workflow, including numerical methods for inference, diagnosis of sampling, evaluation and criticism of models, comparison of models and presentation of results.
Read more about Osvaldo Martin