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You're reading from  Bayesian Analysis with Python - Third Edition

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Published inJan 2024
Reading LevelExpert
PublisherPackt
ISBN-139781805127161
Edition3rd Edition
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Osvaldo Martin
Osvaldo Martin
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Osvaldo Martin

Osvaldo Martin is a researcher at CONICET, in Argentina. He has experience using Markov Chain Monte Carlo methods to simulate molecules and perform Bayesian inference. He loves to use Python to solve data analysis problems. He is especially motivated by the development and implementation of software tools for Bayesian statistics and probabilistic modeling. He is an open-source developer, and he contributes to Python libraries like PyMC, ArviZ and Bambi among others. He is interested in all aspects of the Bayesian workflow, including numerical methods for inference, diagnosis of sampling, evaluation and criticism of models, comparison of models and presentation of results.
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10.5 Sequential Monte Carlo

One of the caveats of Metropolis-Hastings and NUTS (and other Hamiltonian Monte Carlo variants) is that if the posterior has multiple peaks and these peaks are separated by regions of very low probability, these methods can get stuck in a single mode and miss the others!

Many of the methods developed to overcome this multiple minima problem are based on the idea of tempering. This idea, once again, is borrowed from statistical mechanics. The number of states a physical system can populate depends on the temperature of the system; at 0 Kelvin (the lowest possible temperature), every system is stuck in a single state. On the other extreme, for an infinite temperature, all possible states are equally likely. Generally, we are interested in systems at some intermediate temperature. For Bayesian models, there is a very intuitive way to adapt this tempering idea by writing Bayes’ theorem with a twist.

 β p(θ | y)β = p(y | θ) p(θ)

The parameter β is known as the inverse temperature...

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Bayesian Analysis with Python - Third Edition
Published in: Jan 2024Publisher: PacktISBN-13: 9781805127161

Author (1)

author image
Osvaldo Martin

Osvaldo Martin is a researcher at CONICET, in Argentina. He has experience using Markov Chain Monte Carlo methods to simulate molecules and perform Bayesian inference. He loves to use Python to solve data analysis problems. He is especially motivated by the development and implementation of software tools for Bayesian statistics and probabilistic modeling. He is an open-source developer, and he contributes to Python libraries like PyMC, ArviZ and Bambi among others. He is interested in all aspects of the Bayesian workflow, including numerical methods for inference, diagnosis of sampling, evaluation and criticism of models, comparison of models and presentation of results.
Read more about Osvaldo Martin