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You're reading from  Bayesian Analysis with Python - Third Edition

Product typeBook
Published inJan 2024
Reading LevelExpert
PublisherPackt
ISBN-139781805127161
Edition3rd Edition
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Author (1)
Osvaldo Martin
Osvaldo Martin
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Osvaldo Martin

Osvaldo Martin is a researcher at CONICET, in Argentina. He has experience using Markov Chain Monte Carlo methods to simulate molecules and perform Bayesian inference. He loves to use Python to solve data analysis problems. He is especially motivated by the development and implementation of software tools for Bayesian statistics and probabilistic modeling. He is an open-source developer, and he contributes to Python libraries like PyMC, ArviZ and Bambi among others. He is interested in all aspects of the Bayesian workflow, including numerical methods for inference, diagnosis of sampling, evaluation and criticism of models, comparison of models and presentation of results.
Read more about Osvaldo Martin

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1.10 Summary

We began our Bayesian journey with a very brief discussion of statistical modeling, probabilities, conditional probabilities, random variables, probability distributions and Bayes’ theorem. We then used the coin-flipping problem as an excuse to introduce basic aspects of Bayesian modeling and data analysis. We used this classic toy example to convey some of the most important ideas of Bayesian statistics, such as using probability distributions to build models and represent uncertainties. We tried to demystify the use of priors and put them on an equal footing with other elements that are part of the modeling process, such as the likelihood, or even more meta-questions, such as why we are trying to solve a particular problem in the first place.

We ended the chapter by discussing the interpretation and communication of the results of a Bayesian analysis. We assume there is a true distribution that in general is unknown (and in principle also unknowable), from which we get a finite sample, either by doing an experiment, a survey, an observation, or a simulation. To learn something from the true distribution, given that we have only observed a sample, we build a probabilistic model. A probabilistic model has two basic ingredients: a prior and a likelihood. Using the model and the sample, we perform Bayesian inference and obtain a posterior distribution; this distribution encapsulates all the information about a problem, given our model and data. From a Bayesian perspective, the posterior distribution is the main object of interest and everything else is derived from it, including predictions in the form of a posterior predictive distribution. As the posterior distribution (and any other derived quantity from it) is a consequence of the model and data, the usefulness of Bayesian inferences is restricted by the quality of models and data. Finally, we briefly summarized the main aspects of doing Bayesian data analysis. Throughout the rest of this book, we will revisit these ideas to absorb them and use them as the scaffold of more advanced concepts.

In the next chapter, we will introduce PyMC, which is a Python library for Bayesian modeling and probabilistic machine learning and will use more features from ArviZ, a Python library for the exploratory analysis of Bayesian models, and PreliZ a Python library for prior elicitation.

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Published in: Jan 2024Publisher: PacktISBN-13: 9781805127161
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Author (1)

author image
Osvaldo Martin

Osvaldo Martin is a researcher at CONICET, in Argentina. He has experience using Markov Chain Monte Carlo methods to simulate molecules and perform Bayesian inference. He loves to use Python to solve data analysis problems. He is especially motivated by the development and implementation of software tools for Bayesian statistics and probabilistic modeling. He is an open-source developer, and he contributes to Python libraries like PyMC, ArviZ and Bambi among others. He is interested in all aspects of the Bayesian workflow, including numerical methods for inference, diagnosis of sampling, evaluation and criticism of models, comparison of models and presentation of results.
Read more about Osvaldo Martin