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Bayesian Analysis with Python - Third Edition

You're reading from  Bayesian Analysis with Python - Third Edition

Product type Book
Published in Jan 2024
Publisher Packt
ISBN-13 9781805127161
Pages 394 pages
Edition 3rd Edition
Languages
Author (1):
Osvaldo Martin Osvaldo Martin
Profile icon Osvaldo Martin

Table of Contents (15) Chapters

Preface
1. Chapter 1 Thinking Probabilistically 2. Chapter 2 Programming Probabilistically 3. Chapter 3 Hierarchical Models 4. Chapter 4 Modeling with Lines 5. Chapter 5 Comparing Models 6. Chapter 6 Modeling with Bambi 7. Chapter 7 Mixture Models 8. Chapter 8 Gaussian Processes 9. Chapter 9 Bayesian Additive Regression Trees 10. Chapter 10 Inference Engines 11. Chapter 11 Where to Go Next 12. Bibliography
13. Other Books You May Enjoy
14. Index

10.3 Quadratic method

The quadratic approximation, also known as the Laplace method or the normal approximation, consists of approximating the posterior with a Gaussian distribution. To do this, we first find the model of the posterior distribution; numerically, we can do this with an optimization method. Then we compute the Hessian matrix, from which we can then estimate the standard deviation. If you are wondering, the Hessian matrix is a square matrix of second-order partial derivatives. For what we care we can use it to obtain the standard deviation of in general a covariance matrix.

Bambi can solve Bayesian models using the quadratic method for us. In the following code block, we first define a model for the coin-flipping problem, the same one we already defined for the grid method, and then we fit it using the quadratic method, called laplace in Bambi:

Code 10.2

data = pd.DataFrame(data, columns=["w"]) 
priors = {"Intercept": bmb.Prior("Uniform...
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