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Scientific Computing with Python 3

You're reading from  Scientific Computing with Python 3

Product type Book
Published in Dec 2016
Publisher Packt
ISBN-13 9781786463517
Pages 332 pages
Edition 1st Edition
Languages
Authors (3):
Claus Führer Claus Führer
Profile icon Claus Führer
Jan Erik Solem Jan Erik Solem
Olivier Verdier Olivier Verdier
View More author details

Table of Contents (23) Chapters

Scientific Computing with Python 3
Credits
About the Authors
About the Reviewer
www.PacktPub.com
Acknowledgement
Preface
1. Getting Started 2. Variables and Basic Types 3. Container Types 4. Linear Algebra – Arrays 5. Advanced Array Concepts 6. Plotting 7. Functions 8. Classes 9. Iterating 10. Error Handling 11. Namespaces, Scopes, and Modules 12. Input and Output 13. Testing 14. Comprehensive Examples 15. Symbolic Computations - SymPy References

Spectral clustering


An interesting application of eigenvectors is for clustering data. Using the eigenvectors of a matrix derived from a distance matrix, unlabelled data can be separated into groups. Spectral clustering methods get their name from the use of the spectrum of this matrix. A distance matrix for n elements (for example, the pairwise distance between data points) is an n × n symmetric matrix. Given such an n × n distance matrix M with distance values mij , we can create the Laplacian matrix of the data points as follows:

Here, I is the identity matrix and D is the diagonal matrix containing the row sums of M,

 

The data clusters are obtained from the eigenvectors of L. In the simplest case of data points with only two classes, the first eigenvector (that is, the one corresponding to the largest eigenvalue) is often enough to separate the data.

Here is an example for simple two-class clustering. The following code creates some 2D data points and clusters them based on the first...

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