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Bioinformatics with Python Cookbook

You're reading from   Bioinformatics with Python Cookbook Solve advanced computational biology problems and build production pipelines with Python & AI tools

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Product type Paperback
Published in Jan 2026
Last Updated in Oct 2025
Publisher Packt
ISBN-13 9781836642756
Length 617 pages
Edition 4th Edition
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Author (1):
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Shane Brubaker Shane Brubaker
Author Profile Icon Shane Brubaker
Shane Brubaker
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Table of Contents (14) Chapters Close

1. Bioinformatics with Python Cookbook, Fourth Edition: Solve advanced computational biology problems and build production pipelines with Python & AI tools FREE CHAPTER
2. Chapter 1: Computer Specifications and Python Setup 3. Chapter 2: Basics of Data Manipulation 4. Chapter 3: Modern Coding Practices and AI-generated coding 5. Chapter 4: Data Science and Graphing 6. Chapter 5: Alignment and Variant Calling 7. Chapter 6: Annotation and Biological Interpretation 8. Chapter 7: Genomes and Genome Assembly 9. Chapter 8: Accessing Public Databases 10. Chapter 9: Protein Structure and Proteomics 11. Chapter 10: Phylogenetics 12. Chapter 11: Population Genetics 13. Chapter 12: Mectabolic Modeling and Other Applications 14. Chapter 13: Genome Editing

Using pandas to process vaccine-adverse events

We will be introducing pandas with a concrete bioinformatics data analysis example: we will be studying data from the Vaccine Adverse Event Reporting System (VAERS, https://vaers.hhs.gov/). VAERS, which is maintained by the US Department of Health and Human Services, includes a database of vaccine-adverse events going back to 1990.

COVID-19

The COVID-19 pandemic, at its height in 2020-2022, took an estimated 7 million lives globally. The rapid development of COVID vaccines using messenger RiboNucleic Acid (mRNA) technology represented a technological turning point and stemmed the tide of the pandemic. In this approach, mRNA, which is the code for proteins, is introduced into our cells to teach them to make a harmless piece of the protein in the virus, triggering an immune response. In some cases, vaccines can lead to adverse events themselves, in which side effects may cause problems for some individuals. The VAERS database records such...

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