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Bioinformatics with Python Cookbook

You're reading from   Bioinformatics with Python Cookbook Solve advanced computational biology problems and build production pipelines with Python & AI tools

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Product type Paperback
Published in Jan 2026
Last Updated in Oct 2025
Publisher Packt
ISBN-13 9781836642756
Length 617 pages
Edition 4th Edition
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Author (1):
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Shane Brubaker Shane Brubaker
Author Profile Icon Shane Brubaker
Shane Brubaker
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Table of Contents (14) Chapters Close

1. Bioinformatics with Python Cookbook, Fourth Edition: Solve advanced computational biology problems and build production pipelines with Python & AI tools FREE CHAPTER
2. Chapter 1: Computer Specifications and Python Setup 3. Chapter 2: Basics of Data Manipulation 4. Chapter 3: Modern Coding Practices and AI-generated coding 5. Chapter 4: Data Science and Graphing 6. Chapter 5: Alignment and Variant Calling 7. Chapter 6: Annotation and Biological Interpretation 8. Chapter 7: Genomes and Genome Assembly 9. Chapter 8: Accessing Public Databases 10. Chapter 9: Protein Structure and Proteomics 11. Chapter 10: Phylogenetics 12. Chapter 11: Population Genetics 13. Chapter 12: Mectabolic Modeling and Other Applications 14. Chapter 13: Genome Editing

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We will start by installing the basic software that is required for most of this book. This will include the Python distribution, some fundamental Python libraries, and our Jupyter Notebook environment. We will also set up our GitHub environment and gain access to the repository for the book. As different users have different requirements, we will cover two different approaches for installing the software. One approach is using the Anaconda Python (http://docs.continuum.io/anaconda/) distribution and the other is via Docker (a server virtualization method based on containers sharing the same operating system kernel; please refer to https://www.docker.com/). This will still install Anaconda for you but inside a container.If you are using a Windows-based operating system, you are strongly encouraged to consider changing your operating system or using Docker via some of the existing options on Windows. On macOS, you...

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