Technical requirements

In this chapter, we will use the following:

• BioPython
• NGLView
• Pyteomics

You will be instructed on how to install the necessary packages in each recipe.You can find the code for this chapter at https://github.com/PacktPublishing/Bioinformatics-with-Python-Cookbook-Fourth-Edition/tree/main/Ch09.You will want to create a Ch09 working folder.Remember to activate your conda environment before beginning the recipes, like this:

conda activate bioinformatics_base

Or, if you would like to set up a conda environment specific to this chapter, before activating bioinformatics_base, run the following:

conda create -n ch09-proteins --clone bioinformatics_base
conda activate ch09-proteins

You will be able to install the packages for the chapter as you go, or you can use the YAML file provided in the repository:

conda env update --file ch09-proteins.yml