Image Processing with ImageJ - Second Edition

Extract and analyze data from complex images with ImageJ, the world’s leading image processing tool

Image Processing with ImageJ - Second Edition

This ebook is included in a Mapt subscription
Jurjen Broeke, José María Mateos Pérez, Javier Pascau

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Extract and analyze data from complex images with ImageJ, the world’s leading image processing tool
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Book Details

ISBN 139781785889837
Paperback256 pages

Book Description

Advances in image processing have been vital for the scientific and technological communities, making it possible to analyze images in greater detail than ever before. But as images become larger and more complex, advanced processing techniques are required. ImageJ is built for the modern challenges of image processing – it’s one of the key tools in its development, letting you automate basic tasks so you can focus on sophisticated, in depth analysis.

This book demonstrates how to put ImageJ into practice. It outlines its key features and demonstrates how to create your own image processing applications using macros and ImageJ plugins. Once you’ve got to grips with the basics of ImageJ, you’ll then discover how to build a number of different image processing solutions. From simple tasks to advanced and automated image processing, you’ll gain confidence with this innovative and powerful tool – however and whatever you are using it for.

Table of Contents

Chapter 1: Getting Started with ImageJ
ImageJ distributions
The uses of ImageJ
The current state of ImageJ
Integrated environment for acquisition and processing
Obtaining and installing ImageJ
The ImageJ folder structure
Configuring a fresh ImageJ installation
Summary
Chapter 2: Basic Image Processing with ImageJ
Images in ImageJ
Summary
Chapter 3: Advanced Image Processing with ImageJ
Correcting images
Stack processing
Summary
Chapter 4: Image Segmentation and Feature Extraction with ImageJ
Image segmentation
Morphological processing
Image filtering
Feature extraction
Summary
Chapter 5: Basic Measurements with ImageJ
Selections and regions in ImageJ
Basic measurements
Colocalization
Particle analysis
Summary
Chapter 6: Developing Macros in ImageJ
Recording macros
Modifying macros
Showing progress in macros
Running macros in batch process mode
Installing macros
Summary
Chapter 7: Explanation of ImageJ Constructs
Frameworks for macros and plugins
The Application Programming Interface
Setting up NetBeans IDE
Summary
Chapter 8: Anatomy of ImageJ Plugins
The basic anatomy of a plugin
Running and debugging plugins
Examples of available plugins
Summary
Chapter 9: Creating ImageJ Plugins for Analysis
Plugin background and goal
Basic project setup
Creating a basic PlugInFilter
Adding user interaction and preferences
Adding external libraries
Sharing your plugin
Summary
Chapter 10: Where to Go from Here?
Basic development
Additional tools
Project management and feedback
Other resources
Summary

What You Will Learn

  • Install and set up ImageJ for image processing.
  • Process images using ImageJ’s built-in tools
  • Create macros to perform repetitive processing tasks
  • Set up and use an integrated development environment for ImageJ plugins
  • Create plugins with a user-friendly interface for processing
  • Use established ImageJ plugins for processing and quantification
  • Generate a simple interface based on a real world example and create other interfaces for other projects
  • Speed up interface development by setting multiple parameters interactively

Authors

Table of Contents

Chapter 1: Getting Started with ImageJ
ImageJ distributions
The uses of ImageJ
The current state of ImageJ
Integrated environment for acquisition and processing
Obtaining and installing ImageJ
The ImageJ folder structure
Configuring a fresh ImageJ installation
Summary
Chapter 2: Basic Image Processing with ImageJ
Images in ImageJ
Summary
Chapter 3: Advanced Image Processing with ImageJ
Correcting images
Stack processing
Summary
Chapter 4: Image Segmentation and Feature Extraction with ImageJ
Image segmentation
Morphological processing
Image filtering
Feature extraction
Summary
Chapter 5: Basic Measurements with ImageJ
Selections and regions in ImageJ
Basic measurements
Colocalization
Particle analysis
Summary
Chapter 6: Developing Macros in ImageJ
Recording macros
Modifying macros
Showing progress in macros
Running macros in batch process mode
Installing macros
Summary
Chapter 7: Explanation of ImageJ Constructs
Frameworks for macros and plugins
The Application Programming Interface
Setting up NetBeans IDE
Summary
Chapter 8: Anatomy of ImageJ Plugins
The basic anatomy of a plugin
Running and debugging plugins
Examples of available plugins
Summary
Chapter 9: Creating ImageJ Plugins for Analysis
Plugin background and goal
Basic project setup
Creating a basic PlugInFilter
Adding user interaction and preferences
Adding external libraries
Sharing your plugin
Summary
Chapter 10: Where to Go from Here?
Basic development
Additional tools
Project management and feedback
Other resources
Summary

Book Details

ISBN 139781785889837
Paperback256 pages
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